JMOL DOCUMENTATION PDF

Jmol is a free, open source molecule viewer for students, educators, and researchers in For the most up-to-date scripting documentation see the Jmol/ JSmol. Documentation of Jmol’s scripting language can be found here: http://chemapps. This is the official. JSmol is a fully functional implementation of Jmol that does not Various ways to create surfaces and more documentation on surfaces.

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The recommended way to cite Jmol is: You are welcome to browse around and to jmpl new pages, extra information, comments, questions, links to useful examples of Jmol use or Jmol scripting, or whatever else you think is relevant. Main Page From Jmol. Increasing java memory for the applet. More dynamical and frequently updated than this web site! For more information, please visit the Project pages section.

Jmol Documentation

Jmol in an Android tablet. Without subscribing to any lists, you can also search the archives that collect all messages posted to the lists. For more detailed documentation on RasMol scripting see http: Internet Explorer documentaiton not support LiveConnect. That is, objects further away are smaller. This documentation describes and compares the different options available in Jmol scripts for generating surfaces, either based on the molecule or geometric.

Jmol Wiki – Scripting

Jmol is fully scriptable. You should use them only if you are experienced and you know precisely what you need. Retrieved from dpcumentation http: Also, it describes standard color dovumentation in JavaScript and the Netscape 8-bit color palette.

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Has step by step instructions for both Windows and Mac OS X, and for the 5 most popular web browsers. It also provides a testing and demonstration page. The Jmol application is a standalone Java application that runs on the desktop. We recommend that you use the name ‘jmol’ as in:. Therefore, assuming you have named your applet dochmentation, all your references to the applet will start with ‘document. How to configure a wiki so that it uses the Jmol applet. These are official guides for Jmol.

The JmolViewer can be documentahion as a component into other Java applications. Jmol community Jmol Wiki A user-maintained site collecting a lot of information about the use of Jmol. Please, note that these methods are not recommended.

This listing gives brief descriptions of the commands. Table of Contents Testing results. Views Page Discussion View source History.

Table of Contents Scripting References Ways to integrate scripts. Below are given the testing results. Scripting commands are the same under the applet as under the Jmol application.

Learn to use Jmol Manuals and tutorials A handbook has been published for learning Jmol, and there are also other publications about Jmol. The ‘loadInline’ method allows doocumentation to load a molecular model of this type. CML lib docuumentation not compiled with a classic compiler.

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Controls whether or not rotations should be performed with wireframe rendering. This flexibility enables you to create complex user interactions that are controlled using standard web page elements. One method is to use the ‘javascript: Documentation for Surfaces Jmoll documentation describes and compares the different options available in Jmol scripts for generating surfaces, either based on the molecule or geometric.

But content there is currently quite outdated. It has all the capabilities of the JSmol applet but runs approximately times faster.

The RasMol commands which are currently not implemented in Jmol are generally those associated with protein visualization: A handbook has been published for learning Jmol, and there are also other publications about Jmol. Jmol as docummentation standalone application.

Put this file in the directory on your webserver. A list of literature describing Jmol can be found at Jmol Wiki. Using buttons to call javascript methods, each of which is driving a jmol animate script.

Those with interest in molecular visualization, especially the education and research communities, are encouraged to join the jmol-users mailing list or even the jmol-developers mailing list.